.. DreaMS documentation master file, created by
   sphinx-quickstart on Wed Jul 31 22:50:47 2024.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

DreaMS documentation
====================

.. include:: readme.rst

Contents
========

.. toctree::
   :maxdepth: 2

   self

.. toctree::
   :maxdepth: 2
   :caption: Tutorials

   tutorials/msdata
   tutorials/compute_embeddings
   tutorials/library_matching
   tutorials/networking
   tutorials/lsh_clustering
   tutorials/spectral_quality
   tutorials/atlas
   tutorials/pre_trained_module
   tutorials/dreams_fluorine

.. toctree::
   :maxdepth: 2
   :caption: Advanced tutorials

   tutorials/constructing_gems
   tutorials/murcko_hist_split
   tutorials/pre_training
   tutorials/fine_tuning

.. toctree::
   :maxdepth: 2
   :caption: API Reference

   modules